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Publications List |
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Transition state stabilization and substrate strain in enzyme catalysis:
ab initio QM/MM modelling of the chorismate mutase reaction,
K E Ranaghan, L Ridder, B Szefczyk, W A Sokalski, J C Hermann and A J Mulholland,
2004, Organic and Biomolecular Chemistry, 2, 968-980
Conformational effects in enzyme catalysis:
QM/MM free energy calculation of the 'NAC' contribution in chorismate mutase,
K E Ranaghan and A J Mulholland,
2004, Chem Commun, 10, 1238-1239
DNS of the turbulent Ekman layer at Re=2000,
G N Coleman, R Johnstone and M Ashworth,
2005, ERCOFTAC Workshop: Direct and Large-Eddy Simulation-6, 12th-14th September 2005
Reynolds number trends from direct numerical simulation of the turbulent Ekman layer,
G N Coleman, R Johnstone and M Ashworth,
2004, APS Division of Fluid Dynamics 57th Annual Meeting,
Seattle, Washington, USA, 21-23 November 2004.
Direct computation and aeroacoustic modelling of a subsonic axisymmetric jet ,
X Jiang, E Avital and K H Luo,
2004, J Sound and Vibration, 270 (3) 525-538
Sound generation by vortex pairing in subsonic axisymmetric jets,
X Jiang, E Avital and K H Luo,
2004, AIAA J., 42 (2): 241-248
Direct numerical simulation of a neutrally stratified turbulent Ekman layer,
R Johnstone, M Ashworth and G Coleman,
2004, Capability Computing, issue 4, 8-9
PDF
Direct numerical simulation of three-dimensional compressible flows in an open cavity,
H Lai and K H Luo,
2004, Fourth International Conference on Fluid Mechanics, Dalian, China, 20-23 July 2004.
Instabilities, entrainment and mixing in buoyant reacting jets,
K H Luo,
2004, European J Mechanics B: Fluids , 23 (3) 443-460
New opportunities and challenges in fire dynamics modelling,
K H Luo,
2004, Proc 4th Intl Seminar on Fire and Explosion Hazards,
Londonderry, N Ireland, 8-12 September (Invited keynote speech)
Enhancement of mixing and combustion in buoyant non-circular jets,
K H Luo,
2004, Fifth Workshop on DNS and LES: DLES-5, Munich University of Technology, Germany, August 27-29, 2003,
ERCOFTAC Series, Vol 9, R Friedrich, B J Geurts and O Metais (Eds.),
Kluwer Academic Publishers, Dordrecht, 375-384
Aeroacoustics of a perturbed parallel jet flow,
N D Sandham, C L Morfey and Z W Hu,
2004, J Fluid Mech submitted
Turbulence simulation for aeroacoustics applications,
N D Sandham, C L Morfey and Z W Hu,
2004, Advances in Turbulence X, Proceedings of the Tenth European Turbulence Conference
Eds H I Andersson and P-A Krogstad CIMNE, Barcelona
Using a deforming domain to study fluid flow,
C P Yorke,
2004, Capability Computing, issue 4, 5
PDF
Effect of Application and Removal of Adverse Pressure Gradient to Turbulent Wall Layers,
C P Yorke and G N Coleman,
2004, Fifth Workshop on DNS and LES: DLES-5, Munich University of Technology, Germany, August 27-29, 2003,
ERCOFTAC Series, Vol 9, R Friedrich, B J Geurts and O Metais (Eds.),
Kluwer Academic Publishers, Dordrecht, 517-524
Numerical Study of a Turbulent Wall Layer Recovering from an Adverse Pressure Gradient,
C P Yorke and G N Coleman,
2004, Advances in Turbulence 10, Proceedings from ETC10, pp 795-798
Dynamics and structure of transitional buoyant jet diffusion flames with side-wall effects,
X Jiang and K H Luo,
2003, Combustion and Flame, 133 (1-2) 29-45
Multiphoton double ionization of atoms and molecules by FEL XUV light,
K T Taylor, J S Parker, D Dundas, K J Meharg, B J S Doherty, D S Murphy and J F McCann,
Journal of Electron Spectroscopy and Related Phenomenon, 144, 1191-1196 (June 2005)
Benchmark multiphoton ionization rates for He at 390nm,
H W van der Hart, B J S Doherty, J S Parker and K T Taylor,
2005, J Phys B: At Mol Opt Phys, 38, L207-L214
Electron impact excitation of FeII: total LS effective collision strengths,
C A Ramsbottom, C J Noble, V M Burke, M P Scott, R Kisielius and P G Burke,
2005, J Phys B: At Mol Opt Phys, 38, 2999-3014
'Two-particle-one-hole' resonances in electron-impact excitation of Ni V,
M P Scott, C A Ramsbottom, C J Noble, V M Burke and P G Burke,
2005, poster presentation 37th Conference of the European Group for Atomic Systems
Dublin City University, Dublin, Ireland, August 3rd-6th 2005
Molecular effects in the ionization of N2, O2 and F2 by intense laser fields,
D Dundas and J M Rost,
2005, Phys Rev A, 71, 013421
Laser-driven double-ionisation: the HELIUM code on HPCx,
B J S Doherty, J S Parker and K T Taylor,
2005, Capability Computing, issue 5, 14-15
PDF
Calculating electron impact excitation of iron peak elements on HPCx using parallel R-matrix codes,
P G Burke, A Hibbert, B M McLaughlin, C A Ramsbottom,
M P Scott, V M Burke, C J Noble and A G Sunderland,,
2004, Capability Computing, issue 3, 7
PDF
2DRMP-G: Migrating a large-scale numerical mathematical application to a grid environment,
A Carson, T J Harmer, N S Scott, V Faro-Mazo, M P Scott and P G Burke,
2004, VECPAR 2004 6th International Meeting on High Performance Computing for Computational Science,
Conference Proceedings, Vol I, p93-106, Spain
Accurate and efficient non-adiabatic quantum molecular dynamics approach for laser-matter interactions,
D Dundas,
2004, J Phys B: At Mol Opt Phys, 37, 2883-2901
Low-energy behaviour of e–O scattering calculations,
M Plummer, C J Noble and M Le Dourneuf,
2004, J Phys B: At Mol Opt Phys, 37, 2979-2996
Configuration interaction effects in low-energy electron collisions with FeII,
C A Ramsbottom, C J Noble, V M Burke, M P Scott and P G Burke,
2004, J Phys B: At Mol Opt Phys, 37 (18), 3609-3631
Few electron dynamics of atoms and molecules in intense laser fields,
K T Taylor, J S Parker, D Dundas, K J Meharg, L-Y Peng, B J S Doherty and J F McCann,
2004, Physica Scripta, Vol T110, 154-160
Time delay between singly and doubly ionizing wavepackets in laser-driven helium,
J S Parker, B J S Doherty, K J Meharg and K T Taylor,
2003, J Phys B: At Mol Opt Phys, 36, L393-L400
Non-Hermitian Floquet dynamics of argon atoms at 248 nm,
M Plummer and C J Noble,
2003, J Phys B: At Mol Opt Phys, 36, L219-L226
Rovibrational product state distribution for inelastic H + D2 collisions,
A.E. Pomerantz, F. Ausfelder, R.N. Zare, J.C. Juanes-Marcos, S.C. Althorpe, V. Sáez Rábanos, F.J. Aoiz, L. Bañares and J.F. Castillo,
2004, J. Chem. Phys. 121, 6587-6590
Plane wave packet formulation of atom-plus-diatom quantum reactive scattering,
S.C. Althorpe,
2004, J. Chem. Phys. 121, 1175-1186
Collision energy dependence of the HD(v'=2) product rotational distribution of the H + D2 reaction in the range 1.30-1.89 eV,
F. Ausfelder, A.E. Pomerantz, R.N. Zare, S.C. Althorpe, F.J. Aoiz, L. Bañares and J.F.
Castillo,
2004, J. Chem. Phys. 120, 3255-3264
Disagreement between theory and experiment in the simplest chemical reaction: collision energy dependent rotational distributions for H + D2 --> HD(nu' = 3,j') + D,
A.E. Pomerantz, F. Ausfelder, R.N. Zare, S.C. Althorpe, F.J. Aoiz, L. Bañares and J.F. Castillo,
2004, J. Chem. Phys. 120, 3244-3254
New vibration-rotation code for tetraatomic molecules exhibiting wide-amplitude motion: WAVR4,
I. N. Kozin, M. M. Law, J. Tennyson and J. M. Hutson,
2004, Computer Phys. Comms., 163, 117-131
High accuracy ab initio rotation-vibration transitions of water,
O.L. Polyansky, A.G. Csaszar, S.V. Shirin, N.F. Zobov, P. Barletta, J. Tennyson, D.W. Schwenke and P.J. Knowles,
2003, Science, 299, 539-542
Calculating energy levels of isomerizing tetraatomic molecules: I. The rovibrational bound states of Ar2HF,
I. N. Kozin, M. M. Law, J. M. Hutson and J. Tennyson,
2003, J. Chem. Phys. 118, 4896-4904
Quantum Monte Carlo calculations of the structural properties and the
B1-B2 phase transition of MgO,
D. Alfè, M. Alfredsson, J. Brodholt, M.J. Gillan, M.D. Towler, R.J. Needs,
2005, Phys Rev B, 72, 014114
The Schottky defect formation energy in MgO calculated by diffusion Monte Carlo,
D Alfè and M J Gillan,
2005, Phys Rev B, 71, 220101
Linear-scaling quantum Monte Carlo technique with non-orthogonal localized orbitals,
D Alfè and M J Gillan,
2004, J Phys: Condensed Matter, 16 L305
Efficient localized basis set for quantum Monte Carlo calculations on condensed matter,
D Alfè and M J Gillan,
2004, Phys Rev B, 70, 161101(R)
A Ferromagnetic Defect Structure of Rhombohedral Pressure-Polymerized C60,
J Chan, B Montanari, J D Gale, S M Bennington and N M Harrison,
2004, Phys Rev Rapid Commun, in press
The Electronic Structure of CaCuO2 from the B3LYP hybrid density functional,
X-B Feng and N M Harrison,
2004, Phys Rev B, 69, 132502
The Metal-Insulator and Magnetic Transition of NiO at High Pressures,
X-B Feng and N M Harrison,
2004, Phys Rev B, 69 035114
A First Principles Study of Hydrogen Intercalation in Rutile Structured Titanium Dioxide,
M V Koudriachova, S W de Leeuw and N M Harrison,
2004, Phys Rev B, in press
Solvation of Metal Nanoparticles in a Subcritical - Supercritical Fluid: A Computer Simulation Study,
M Lal, M Plummer, N J Richmond, and W Smith,
2004, J Phys Chem B, 108 (19), 6052-6061
Hybrid density functional study of organic magnetic crystals:
bi metallic CrIII cyanides and rhombohedral C60,
B Montanari, J A Chan, W L Chan and N M Harrison,
2004, Mol Phys, in press
Pressure induced instabilities in bulk TiO2 rutile,
B Montanari and N M Harrison,
2004, J Phys: Condensed Matter, 16, 273
Electronic and magnetic structure of LaMnO3 from hybrid periodic density functional theory,
D Munoz, N M Harrison and F Illas,
2004, Phys Rev B, 69, 085115
Spin singlet formation in MgTi2O4: evidence of a chiral dimerization pattern,
M Schmidt, W Ratcliff II, P G Radaelli, K Refson, N M Harrison and S W Cheong,
2004, Phys Rev Lett, 92, 061801
A hybrid QM/MM embedding approach for the treatment of localised surface states in ionic materials,
A A Sokol, S T Bromley, S A French, C R A Catlow and P Sherwood,
2004, International Journal of Quantum Chemistry, 99, 695-712
Ab Initio Theory of Magnetic Interactions at Surfaces,
C Sousa, C de Graaf, N Lopez, N M Harrison and F Illas,
2004, J Phys: Condensed Matter, in press
The Structure and Properties of Ilmenite from First Principles,
N C Wilson, J Muscat, D Mkhonto, PE Ngoepe and N M Harrison,
2004, Phys Rev B, submitted
CRYSTAL on HPCx: ab initio studies of proteins,
I J Bush,
2003, Capability Computing, issue 2, 10-12
PDF
Effect of the surface model on the theoretical description of the chemisorption of atomic hydrogen on Cu(001),
D Domínguez-Ariza, C Sousa, N M Harrison, M V Ganduglia-Pirovano, F Illas,
2003, Surface Science, 522, 185
A New Phase of Lithiated Titania Predicted from First Principles,
M V Koudriachova, S W De Leeuw, N M Harrison,
2003, Chem Phys Lett, 371, p 150
Diffusion of Li-ions in rutile An Ab Initio Study,
M V Koudriachova, N M Harrison, S W De Leeuw,
2003, Solid State Ionics, 157, p 35
Surface to bulk charge transfer at an alkali metal/metal oxide interface,
R Lindsay, E Michelangeli, B G Daniels, M Polcik, A Verdini, L Floreano, A Morgante, J Muscat,
N M Harrison and G Thornton,
2003, Surf Sci Lett, 547, L859
Stability of rocksalt polar surfaces: An ab initio study of MgO(111) and NiO(111),
A Wander, I J Bush, and N M Harrison,
2003, Phys Rev B, 68, 233405
Extending the domain of quantum mechanical simulations with HPCx,
D Alfè,
2003, Capability Computing, issue 1, 3
PDF
Crystals in nanotubes: The real role of tube-wall interactions,
M Thomas, A Kirkland, J H Harding and P J D Lindan,
Chem Comm, in preparation
Dissociation of water on TiO2 (110): roads less travelled,
P J D Lindan and C Zhang,
Phys Rev B (submitted)
Co-operative effects within co-adsorbed O and H20 on TiO2 (110),
C Zhang and P J D Lindan,
J Chem Phys, in press
The unexpected preference for the fac-isomer with
Tris(5-seter-substituted-2,2’-bipyridine) complexes of ruthenium (II),
E A Armstrong, R T Brown, M S Sekwale, N C Fletcher, X-Q Gong and P Hu,
2004, Inorg Chem, 43, 1714
When simple systems do complex things,
S Bates,
2004, Capability Computing, issue 4, 3-4
PDF
Hartree-Fock exchange in time dependent density functional theory:
Application to charge transfer excitations in solvated molecular systems,
L Bernasconi, M Sprik, J Hutter,
2004, Chem Phys Lett, 394, 141
Electronic structure and solvation of copper and silver Ions:
A theoretical picture of a model aqueous redox reaction,
J Blumberger, L Bernasconi, I Tavernelli, R Vuilleumier and M Sprik,
2004, J Am Chem Soc, 126, 3928
Free energy of oxidation of metal aqua Ions by an enforced change of Coordination,
J Blumberger, M Sprik,
2004, J Phys Chem B, 108, 6529
Field penetration induced charge redistribution effects on the
field emission properties of carbon nanotubes,
C W Chen, M H Lee and S J Clark,
2004, Appl Surf Sci, 228, 143
Hot-atom O2 dissociation and oxide nucleation on Al(111),
L Colombi Ciacchi and M C Payne,
2004, Phys Rev Lett, 92, 176104
The entry pathway of O2 into human ferritin,
L Colombi Ciacchi and M C Payne,
2004, Chem Phys Lett, 390, 491-495
The formation of defect complexes in a ZnO grain boundary,
H S Domingos, J M Carlsson, P D Bristowe and B Hellsing,
2004, Interface Sci 12, 227
Methanol-water solutions: a bi-percolating liquid mixture,
L Dougan, S P Bates, R Hargreaves, J P Fox, J Crain, J L Finney, V Reat and A K Soper,
2004, J Chem Phys, accepted
Hallmark of perfect graphene,
E J Duplock, M Scheffler and P J D Lindan,
2004, Phys Rev Lett, 92, 225502
Dynamic simulation of pressure-driven phase transitions in Al2O3,
S Jahn, P A Madden, and M Wilson,
2004, Phys Rev B, 69, 020106
Liquid water from first principles, investigation of different sampling approaches,
I-F W Kuo, C J Mundy, M J McGrath, J I Siepmann, J VandeVondele, M Sprik,
J Hutter, B Chen, M L Klein, F Mohamed, M Krack and M Parrinello,
2004, J Phys Chem B, 108, 12990
The interdependence of defects, electronic structure and surface chemistry,
P J D Lindan, E J Duplock, C Zhang, M Thomas, R Chatten and A Chadwick,
2004, Dalton Trans, in press
Pressure induced instabilities in bulk TiO2 rutile,
B Montanari and N M Harrison,
2004, J Phys: Condensed Matter, 16, 273
Langevin Dynamics in Constant Pressure Extended Systems,
D Quigley and M I J Probert,
2004, J Chem Phys, 120 (24), 11432-11442
Spin singlet formation in MgTi2O4: evidence of a chiral dimerization pattern,
M Schmidt, W Ratcliff II, P G Radaelli, K Refson, N M Harrison and S W Cheong,
2004, Phys Rev Lett, 92, 061801
Ab initio studies of strained wurtzite GaN surfaces,
V Timon, S Brand and S J Clark,
2004, J Phys: Condensed Matter, 16, 531
Multipoles and interaction potentials from planewave DFT calculations,
A Aguado, L Bernasconi, and P A Madden,
2003, Faraday Discussions, 124, 171
An interfacial complex in ZnO and its influence on charge transport,
J M Carlsson, H S Domingos, P D Bristowe and B Hellsing,
2003, Phys Rev Lett, 91, 165506
The effects of doping a grain boundary in ZnO with various concentrations of Bi,
J M Carlsson, B Hellsing, H S Domingos and P D Bristowe,
2003, Surf Sci, 532-535, 351
Surface to bulk charge transfer at an alkali metal/metal oxide interface,
R Lindsay, E Michelangeli, B G Daniels, M Polcik, A Verdini, L Floreano, A Morgante,
J Muscat, N M Harrison and G Thornton,
2003, Surf Sci Lett, 547, L859
Ab initio computational crystallography of 2:1 clay minerals: 1. Pyrophyllite-1Tc,
K Refson, S H Park and G Sposito,
2003, J Phys Chem B107, 13376
The Structure of the c(2x2)Pt-Cu(100) System: A Combined LEED and ab initio Study,
A Wander, E AlShamaileh and C J Barnes,
2003, J Phys: Condensed Matter, 15, 1879
The Stability of Polar Rocksalt Surfaces: An ab initio Study of MgO(111) and NiO(111),
A Wander, I J Bush and N M Harrison,
2003, Phys Rev B, 68, 233405
The Structure of Highly Defective ZnO(10-10),
A Wander and N M Harrison,
2003, Surf Sci, 529, L281
Adsorption of SO2 on TiO2 (110): a density-functional study,
C Zhang and P J D Lindan,
2003, Chem Phys Lett, 373, 15-21
Multilayer water adsorption on TiO2 (110),
C Zhang and P J D Lindan,
2003, J Chem Phys, 118, 4620-4630
Towards a first-principles picture of the oxide-water interface,
C Zhang and P J D Lindan,
2003, J Chem Phys, 119, 9183-9190
Microinstability physics as illuminated by the ST,
C M Roach et al,
2005, invited talk, 32nd EPS Conference on Plasma Physics, June 2005
Gyrokinetic microstability in spherical tokamaks,
C M Roach, D J Applegate, S C Cowley, W D Dorland and N Joiner,
2004, Theory of Fusion Plasmas, Joint Varenna-Lausanne International Workshop, Villa Monastero, Varenna, Italy, August 30-September 3, p.25
High beta electron microstability in spherical tokamaks,
N J Joiner, D J Applegate, S C Cowley, W Dorland and C M Roach,
2004, 31st EPS Conference on Plasma Phys. London, 28 June - 2 July 2004 ECA Vol.28G, P-4.189
Electron inertial effects on Alfven Modes at magnetic X points,
K. G. McClements, A. Thyagaraja, P. J. Knight, N. Ben Ayed and L. Fletcher,
2004, 31st EPS Conference on Plasma Phys. London, 28 June - 2 July 2004 ECA Vol.28G, P-5.061
Kinetic insights into polymorphism in pharmaceutical (solid state) chemistry,
S Hamad, C R A Catlow, A T Hulme and S L Price,
2005, Capability Computing, issue 5, 4-5
PDF
Fluctuating Lattice Boltzmann,
R Adhikari, K Stratford, M E Cates and A J Wagner,
2005, Europhysics Letters, 71, 473
Colloidal Arrest by Capillary Forces,
M E Cates, R Adhikari and K Stratford,
2005, J Phys: Condensed Matter, 17, S2771-S2778
Physical and Computational Scaling Issues in Lattice Boltzmann Simulations of Binary Fluid Mixtures,
M E Cates, J-C Desplat, P Stansell, A J Wagner, K Stratford, R Adhikari and I Pagonabarraga,
2005, Phil Trans Roy Soc A, 363 (1833), 1917-1935
Simulating Colloid Hydrodynamics with Lattice Boltzmann Methods,
M E Cates, K Stratford, R Adhikari, P Stansell, J-C Desplat, I Pagonabarraga and A J Wagner,
2004, J Phys: Condensed Matter, 16, S3903-S3915
Large-scale grid-enabled lattice-Boltzmann simulations of complex fluid flow in porous media and under shear,
J Harting, M Venturoli and P V Coveney,
2004, Phil Trans Roy Soc A, 362 (1821), 1703-1722
The TeraGyroid Experiment,
S M Pickles, R J Blake, B M Boghosian, J M Brooke, J Chin, P E L Clarke, P V Coveney,
N Gonzalez-Segredo, R Haines, J Harting, M Harvey, M A S Jones, M Mc Keown, R L Pinning,
A R Porter, K Roy, and M Riding,
2004, Presented by Stephen Pickles at the Workshop on Case Studies on Grid Applications,
13 March 2004, Berlin, Germany, held in conjunction with GGF10
Lattice Boltzmann for Binary Fluids with Suspended Colloids,
K Stratford, R Adhikari, I Pagonabarraga, J-C Desplat,
2004, ICMMES proceedings and J Stat Phys in press
See also http://arxiv.org/abs/cond-mat/0407631
Steering in computational science: mesoscale modelling and simulation,
J Chin, J Harting, S Jha, P V Coveney, A R Porter, and S M Pickles,
2003, Contemporary Physics, 44, 417-434
RealityGrid: high performance computing, visualisation, computational steering and teragrids,
J Harting, S Wan, and P V Coveney,
2003, Capability Computing, issue 2, 4-7
PDF
Helicopter rotor wake simulation using HPCx,
C B Allen,
2005, Capability Computing, issue 5, 10-13
PDF
UK Applied Aerodynamics Consortium (UKAAC) established,
K J Badcock,
2004, Capability Computing, issue 4, 7
PDF
A study of Agulhas rings in a high-resolution ocean model,
A C Coward, J Donners and S S Drijfhout,
2004, Capability Computing, issue 4, 11-12
PDF
Impact of cooling on the water mass exchange of Agulhas rings
in a high resolution ocean model,
J Donners, S S Drijfhout and A C Coward,
2004, Geophys Res Lett, 31, 16, L16312,10.1029/2004GL020644
HiGEM1 on HPCx: High Resolution Global Environmental Modelling,
W Norton,
2004, Capability Computing, issue 3, 6-7
PDF
Science outcomes from the use of Grid tools in the eMinerals project,
S. Wells, M. Alfredsson, J. Bowe, J. Brodholt, R. Bruin, M. Calleja, R.Catlow, D. J. Cooke M. T. Dove, Z. Du, S. Kerisit, N. De Leeuw, A. Marmier, S. Parker, G. D. Price, B. Smith, H. Spohr, I. Todorov, K. Tachenchko, J. Wakelin. K. Wright,
2004, Proc. of the 2004 UK E-Science All Hands Meeting, Nottingham, 240-247
Electronic structure of the anti-ferromagnetic B1-structured FeO,
M. Alfredsson, G. D. Price, C. R. A. Catlow, S. C. Parker and R. Orlando, and J. P. Brodholt,
2004, Phys. Rev. B, 70, 165111
e-Minerals: environment from the molecular level,
J Wakelin,
2003, Capability Computing, issue 4, 10
PDF
Possible thermal and chemical stabilisation of body-centred-cubic iron in the Earth's core,
L.Vocadlo, D.Alfe, M.J. Gillan, I.G. Wood, J.P. Brodholt and G.D. Price,
2003, Nature, 424:536-539
Optimization of the POLCOMS Hydrodynamic Code for Terascale High-Performance Computers,
M Ashworth, J T Holt and R Proctor,
2004, Proceedings of the 18th International Parallel & Distributed Processing Symposium, 26th-30th April 2004, Santa Fe, New Mexico
Anomalous resistivity and the non-linear evolution of the ion-acoustic instability,
P Petkaki, T Kirk, C E J Watt, R B Horne, and M P Freeman,
2004, Journal of Geophysical Research, submitted
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